What I mean by a miracle are things like the Staff of Moses which transformed into a serpent or opened up the river of Nile, or the clothes of Joseph which healed Jacob's blind eyes.
Are there any more mentions of miracles in the Qur'an?
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It's quite difficult to list Allah's miracles, even if restricted to those mentioned in the Qur'an. Isn't every word in the Qur'an a miracle?
Here's a (likely incomplete) list where Allah specifically intervened and scientific laws were radically overruled:
The creation of the Heavens and the Earth (Qur'an 2:29).
The creation of man (Qur'an 3:59).
Prophet Muhammad's night journey (Qur'an 17:1).
The Moon splitting in two (Qur'an 54:1).
The revelation of the Qur'an itself (Qur'an 17:88).
Virgin Mary giving birth to Prophet Isa (Qur'an 19:20).
Prophet Isa breathing life into a clay bird (Qur'an 3:49).
Prophet Isa curing the blind and the leper (Qur'an 3:49).
Prophet Isa giving life to the dead (Qur'an 3:49).
Prophet Isa speaking from the cradle (Qur'an 19:29).
The raising of Prophet Isa (Qur'an 4:158).
Prophet Musa's staff consuming magicians' conjurations (Qur'an 26:45).
Prophet Musa parting the seas (Qur'an 26:63).
Prophet Musa bringing forth twelve springs from a stone (Qur'an 2:60).
Prophet Nuh and the flood (Qur'an 11:44).
Prophet Nuh lived for 950+ years (Qur'an 29:14).
Prophet Jonah swallowed by the big fish (Qur'an 37:142).
Destruction of the people of 'Ad (Qur'an 46:25).
Destruction of the people of Lut (Qur'an 11:82).
Destruction of the people who disbelieved Prophet Shu'ayb (Qur'an 11:94).
Destruction of the people who disbelieved Prophet Saleh (Qur'an 27:51).
Prophet Yusef's ability to interpret dreams (Qur'an 12:43).
Prophet Abraham shown Heavens and Earth (Qur'an 6:75).
Prophet Abraham Bringing dead birds back to life (Qur'an 2:260).
Prophet Abraham thrown into fire, but which was made cool (Qur'an 21:69).
Prophet Abraham sacrificing his son (Qur'an 37:103-107).
Prophet Sulaiman and the spring of liquid copper (Qur'an 34:12).
Prophet Yaqub's clothes curing his father's (Prophet Jacob) blindness (Qur'an 12:93).
Prophet Uzair died for 100 years and was revived (Qur'an 2:259).
The dwellers of the cave slept for years (Qur'an 18:11).
Every Prophet named in the Qur'an has some miraculous element to their story (or else they wouldn't be a Prophet). There's a Wikipedia list of Miracles of Muhammad (many are hadith-based). There are also things I'm unsure if I should list, like angels and jinn, and Allah's she-camel.